KEGG T40000: 11027168

Viruses: 11027168

Entry

11027168          CDS       T40000

Symbol

POLY, HCV4_gp1

Name

(RefSeq) Hepatitis C virus genotype 4; polyprotein

K19358

Hepatitis C virus polyprotein

Virus

33745 Hepatitis C virus genotype 4

SSDB

Motif

Pfam:

HCV_NS1 RdRP_3 HCV_env HCV_NS5a_C HCV_NS2 HCV_NS4b Peptidase_S29 HCV_capsid HCV_core HCV_NS5a_1b HCV_NS4a HCV_NS5a_1a HCV_NS5a Flavi_DEAD Helicase_C

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

RS:

UniProt:

Structure

Position

NC_009825:280..9306

AA seq 3008 aa
MSTNPKPQRKTKRNTNRRPMDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRG
RRQPIPKARRPEGRSWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPSWGPNDPRGRSRNLG
KVIDTLTCGFADLMGYIPLVGAPVGSVARALAHGVRALEDGINYATGNLPGCSFSIFLLA
LLSCLTVPASAVNYRNVSGIYHVTNDCPNSSIVYEADHHIMHLPGCVPCVREGNQSRCWV
ALTPTVAAPYIGAPLESLRSHVDLMVGAATVCSGLYIGDLCGGLFLVGQMFSFRPRRHWT
TQDCNCSIYTGHITGHRMAWDMMMNWSPTTTLVLAQVMRIPTTLVDLLSGGHWGVLVGVA
YFSMQANWAKVILVLFLFAGVDAETHVSGAAVGRSTAGLANLFSSGSKQNLQLINSNGSW
HINRTALNCNDSLNTGFLASLFYTHKFNSSGCSERLACCKSLDSYGQGWGPLGVANISGS
SDDRPYCWHYAPRPCGIVPASSVCGPVYCFTPSPVVVGTTDHVGVPTYTWGENETDVFLL
NSTRPPHGAWFGCVWMNSTGFTKTCGAPPCEVNTNNGTWHCPTDCFRKHPETTYAKCGSG
PWITPRCLIDYPYRLWHFPCTANFSVFNIRTFVGGIEHRMQAACNWTRGEVCGLEHRDRV
ELSPLLLTTTAWQILPCSFTTLPALSTGLIHLHQNIVDVQYLYGVGSAVVSWALKWEYVV
LAFLLLADARVSAYLWMMFMVSQVEAALSNLININAASAAGAQGFWYAILFICIVWHVKG
RFPAAAAYAACGLWPCFLLLLMLPERAYAYDQEVAGSLGGAIVVMLTILTLSPHYKLWLA
RGLWWIQYFIARTEAVLHVYIPSFNVRGPRDSVIVLAVLVCPDLVFDITKYLLAILGPLH
ILQASLLRIPYFVRAQALVKICSLLRGVVYGKYFQMVVLKSRGLTGTYIYDHLTPMSDWP
PYGLRDLAVALEPVVFTPMEKKVIVWGADTAACGDIIRGLPVSARLGNEILLGPADTETS
KGWRLLAPITAYAQQTRGLFSTIVTSLTGRDTNENCGEVQVLSTATQSFLGTAVNGVMWT
VYHGAGAKTISGPKGPVNQMYTNVDQDLVGWPAPPGVRSLAPCTCGSADLYLVTRHADVI
PVRRRGDTRGALLSPRPISILKGSSGGPLLCPMGHRAGIFRAAVCTRGVAKAVDFVPVES
LETTMRSPVFTDNSTPPAVPQTYQVAHLHAPTGSGKSTKVPAAHAAQGYKVLVLNPSVAA
TLGFGVYMSKAYGIDPNIRSGVRTITTGAPITYSTYGKFLADGGCSGGAYDIIICDECYS
TDSTTILGIGTVLDQAETAGVRLTVLATATPPGSVTTPHSNIEEVALPTTGEIPFYGKAI
PLELIKGGRHLIFCHSKKKCDELARQLTSLGLNAVAYYRGLDVSVIPTSGDVVVCATDAL
MTGFTGDFDSVIDCNTSVIQTVDFSLDPTFSIEITTVPQDAVSRSQRRGRTGRGRLGTYR
YVTPGERPSGMFDTAELCECYDAGCAWYELTPAETTTRLKAYFDTPGLPVCQDHLEFWES
VFTGLTHIDGHFLSQTKQSGENFPYLVAYQATVSAKVWLAPPSWDTMWKCLIRLKPTLHG
PTPLLYRLGSVQNEVVLTHPITKYIMACMSADLEVVTSTWVLVGGVLAALAAYCLSVGSV
VIVGRVVLSGQPAVIPDREVLYQQFDEMEECSKHLPLVEHGLQLAEQFKQKALGLLNFAG
KQAQEATPVIQSNFAKLEQFWANDMWNFISGIQYLAGLSTLPGNPAIASLMSFTAAVTSP
LTTQQTLLFNILGGWVASQIRDSDASTAFVVSGLAGAAVGSVGLGKILVDILPGYGAGVR
GAVVTFKIMSGEMPSTEDLVNLLPAILSPGALVVEVVCPAILRRHVGPGEGAVQWMNRLI
AFASRGNHVSPTHYVPESDAARRVTTILSSLTVTSLLRRLHKWINEDCSTPCAESWLWEV
WDWVLHVLSDFKTCLKAKFVPLMPGIPLLSWPRGYKGEWRGDGVMHTTCPCGADLAGHIK
NGSMRITGPKTCSNTWHGTFPINAYTTGPGVPIPAPNYKFALWRVSAEDYVEVRRVGDFH
YVTGVTQDNIKFPCQVPAPELFTEVDGIRIHRHAPKCKPLLRDEVSFSVGLNSFVVGSQL
PCEPEPDVAVLTSMLTDPSHITAESARRRLARGSRPSLASSSASQLSPRLLQATCTAPHD
SPGTDLLEANLLWGSTATRVETDEKVIILDSFESCVAEQNDDREVSVAAEILRPTKKFPP
ALPIWARPDYNPPLTETWKQQDYQAPTVHGCALPPAKQPPVPSPRRKRTVQLTESVVSTA
LAELAAKTFGQSEPSSDRDTDLTTPTETTDSGPIVVDDASDDGSYSSMPPLEGEPGDPDL
TSDSWSTVSGSEDVVCCSMSYSWTGALVTPCAAEESKLPISPLSNSLLRHHNMVYATTTR
SAVTRQKKVTFDRLQVVDSTYNEVLKEIKARASRVKPRLLTTEEACDLTPPHSARSKFGY
GKKDVRSHSRKAINHISSVWKDLLDDNNTPIPTTIMAKNEVFAVNPAKGGRKPARLIVYP
DLGSRVCEKRALHDVIKKTALAVMGAAYGFQYSPAQRVEFLLTAWKSKNDPMGFSYDTRC
FDSTVTEKDIRVEEEVYQCCDLEPEARKVITALTDRLYVGGPMHNSKGDLCGYRRCRATG
VYTTSFGNTLTCYLKATAAIRAAALRDCTMLVCGDDLVVIAESDGVEEDNRALRAFTEAM
TRYSAPPGDAPQPAYDLELITSCSSNVSVAHDVTGKKVYYLTRDPETPLARAVWETVRHT
PVNSWLGNIIVYAPTIWVRMILMTHFFSILQSQEALEKALDFDMYGVTYSITPLDLPAII
QRLHGLSAFTLHGYSPHELNRVAGALRKLGVPPLRAWRHRARAVRAKLIAQGGRAKICGI
YLFNWAVKTKLKLTPLPAAAKLDLSGWFTVGAGGGDIYHSMSHARPRYLLLCLLILTVGV
GIFLLPAR

NT seq 9027 nt +upstreamnt +downstreamnt
atgagcacgaatcctaaacctcaaagaaaaaccaaacgtaacaccaaccgccgcccaatg
gacgttaagttcccgggtggtggccagatcgttggcggagtttacttgttgccgcgcagg
ggccccagattgggtgtgcgcgcgactcggaagacttcggagcggtcgcaacctcgtgga
agacgccaacctatccccaaggcgcgtcgacccgagggaaggtcctgggcacaaccagga
tatccatggcctctttacggtaatgagggttgtgggtgggcaggatggctcttgtccccc
cgtggctctcgaccgtcttggggcccaaatgatccccgcgggaggtcccgcaatttgggt
aaggtcatcgataccctaacctgcggcttcgccgacctcatgggatacatcccgctcgta
ggcgcccccgtgggtagcgtcgccagggccctggcacatggtgtcagggctttggaggac
gggatcaattatgcaacagggaatctccccggttgctccttttctatcttcctcttggca
cttctttcgtgcctgactgtccccgcttcggccgttaactatcgcaatgtctcaggcatc
taccatgtcaccaatgactgcccgaattcaagcatagtgtatgaggccgaccatcacatc
atgcaccttccaggttgcgtgccctgcgtgagagaggggaatcagtcacgctgctgggtg
gcccttactcctaccgtcgcagcgccatacatcggcgcaccgcttgagtccttacggagt
catgtggatttgatggtgggggccgccactgtctgctcgggtctttacatcggggacctg
tgtggcggcttgttcctagttggccagatgttttcattccgaccacggcgccactggacc
acccaggattgcaattgttccatctacacagggcacattacaggccacagaatggcctgg
gacatgatgatgaactggagtccaacaaccaccttagttctcgcccaggtcatgaggatc
ccaaccactctggtagacttactctctggaggccactggggtgtcctcgtgggggtggcc
tatttcagcatgcaggccaattgggccaaagtcatcttggtcctattcctctttgcaggg
gttgatgccgagactcacgtgtctggggcagcagtcggccggagtaccgccggcttggct
aacctcttttcttctgggtctaagcagaatttacagctcatcaacagcaatgggagctgg
catataaataggactgcccttaactgcaatgacagcttaaacactgggttcttggctagc
ttgttctacacccacaagtttaacagctcagggtgttccgaacggctcgcgtgctgcaag
agccttgacagctacggccaaggctggggcccactcggggtcgctaacatcagcggctcg
tctgatgacaggccttattgctggcactacgcgcctcggccatgcgggattgtgccagca
tccagtgtgtgtggccccgtgtattgtttcactcccagccctgtcgtggtcggtactact
gatcacgtcggggtccctacttacacctggggggagaacgagactgatgtcttccttttg
aactcgaccagaccgccgcatggtgcgtggtttggatgcgtgtggatgaacagtaccggg
ttcaccaaaacctgtggcgcccctccatgcgaggttaacaccaataatgggacctggcac
tgccccaccgattgcttcaggaagcatccggagactacctacgccaagtgcggatcaggg
ccttggatcacaccacgctgcctgattgattacccgtaccggctgtggcatttcccgtgc
accgccaacttctccgtctttaacatcaggacatttgtcggcggtatagagcatcggatg
caagcggcatgcaactggaccaggggggaagtctgtggcttggagcacagggatcgggta
gagctatcacccctgctccttaccactacagcgtggcagatcctcccctgctctttcacc
actttacctgccctctccaccggcttgatccacctccaccaaaatatcgtggacgtccag
tacctctatggtgttggatctgcagtggtatcttgggcccttaagtgggaatatgtggtg
ctcgcgttcctgcttctcgcggacgcgagagtctctgcctacctatggatgatgtttatg
gtaagtcaagttgaggcggctctgtccaacctaattaacatcaatgctgcttcagccgct
ggtgcccaaggcttctggtacgccatcctcttcatctgcattgtctggcatgtcaagggc
cggttcccagctgctgctgcctacgcagcctgcgggctgtggccctgttttctcctgctt
ctgatgctgcctgagagggcttatgcatacgaccaggaagtggcagggtcccttggcggc
gccatcgttgtcatgctgaccattctgacactgtctccgcactacaagttatggctggct
aggggattgtggtggatccaatattttatagctaggaccgaggctgtgctgcatgtctat
attccatccttcaacgtgcgcgggcctcgcgactcagtgattgttcttgcagtcctggtc
tgtccagacctagtatttgacatcacaaaatatcttctggccatcttagggcccctccac
atactccaggcctcgctcctacgcatcccttactttgtgagggcacaagcgctggttaag
atctgcagcttgttgcgtggggtagtttatggcaagtacttccaaatggtcgtgcttaaa
agcaggggcctgactggtacttacatctatgaccaccttactcccatgtcagattggccg
ccttacggcctccgcgatttggcggtggccctagagccagttgtgttcacgcccatggag
aagaaagtcatcgtctggggcgctgacaccgctgcgtgcggagacatcataaggggatta
cctgtttcggccaggttgggcaatgagatcttgctcggaccagccgatacagaaacatca
aaggggtggagactccttgcccccatcacagcatacgcncagcagacccgcggcttgttc
agcaccatcgtaacgagcctcactggcagggacaccaatgagaattgtggcgaagtgcag
gtcttatccaccgctacgcagtccttcctgggtactgcggttaacggcgtgatgtggacc
gtctaccacggggcgggtgccaagaccatcagcggcccgaagggacctgtcaatcaaatg
tacactaatgttgaccaagacttggtggggtggccagcaccccccggagtcagatctctt
gctccgtgcacctgcggctcggcagacttgtatctagtcaccaggcacgcggatgtaata
cccgtgcgcaggagaggagacaccagaggagctctcttgagccctagaccaatatccatt
cttaagggatcttccggaggtccgctgctgtgccccatgggacaccgcgccggcatattc
cgtgcggcggtgtgtactcggggggtagccaaggcggtagacttcgtcccggttgaatct
cttgagactaccatgagatcaccagtgttcactgacaactcaacacccccagcagtgccc
cagacctaccaggtcgcgcacctacacgcaccaacaggaagtggcaagagcactaaggtc
ccggcggcgcatgctgcccaaggctataaagtgctagtgctcaatccttcggttgcggcc
acactgggttttggggtatacatgtccaaggcatatggcatcgacccgaacatccggtcg
ggagtcaggaccatcaccacgggtgcgccaatcacgtactcaacgtatggtaagttcctg
gctgatggaggttgcagcggaggggcatacgacataatcatctgtgacgagtgctattcc
actgactccacaacgatccttggcataggcacagtcctggaccaagcggagaccgctgga
gtgcgcctcaccgtgctcgcgactgctactccgccagggtcagtgactacacctcattcc
aacatagaggaggtcgccctgccaacaacgggggaaatacccttttacggcaaggcgatc
cctctggagctgatcaaggggggcagacatctcatcttctgccattcaaagaaaaagtgc
gatgaactggccagacaactgacatctcttggtctgaatgccgtagcctactacagaggc
ttagacgtttcggtgattcccacgtctggggacgtcgtggtatgcgccacggacgccctc
atgacgggtttcaccggcgactttgactcagtgatagactgcaatacatctgtgatacag
actgttgacttcagcttggaccccaccttctccatagagattacaaccgttccccaggac
gcggtatcccgcagccagcggagaggccgcactggtagggggaggttgggcacataccgg
tatgtcaccccgggagagagaccatcaggcatgtttgacactgcagagctttgcgagtgc
tacgatgccgggtgcgcctggtacgagctgacacctgctgaaaccacaacaaggctgaaa
gcttacttcgacacaccaggccttcctgtgtgccaagaccatctggaattctgggagagc
gtctttacagggttaacccacatagacggtcatttcctatcccagaccaagcaatcgggt
gagaatttcccgtatcttgttgcttaccaagcgacggtgtcggccaaggtctggctcgct
ccaccaagctgggacaccatgtggaagtgcctaattcgccttaagcccaccctgcacggg
cccacgcccctcctctacagactggggtctgtgcagaatgaagtggtgctcacccatccc
atcaccaaatacatcatggcttgcatgtcagctgatctcgaggtagtgacaagtacgtgg
gtcttggtgggcggcgtcctggcagctctggctgcttactgtctttcagtgggcagcgta
gtgattgttgggagagtcgtcctgtcgggccaacctgctgtcattcctgatcgcgaagtg
ctctaccaacagttcgacgaaatggaggagtgttccaaacacctcccactagtcgagcac
gggttacaactggctgagcagttcaagcagaaggccttaggtctcctaaatttcgctggc
aagcaagcccaagaggcaacaccagtgatccagtctaacttcgctaaacttgagcagttt
tgggcgaacgacatgtggaatttcatcagcggcattcaatatctcgctggactgtctact
ttgccaggcaatcctgccattgcttccctcatgtcctttactgctgccgttacaagccct
ctgaccacccaacaaaccctcctttttaacatcttggggggatgggtggcctcacagatt
cgcgactccgatgcttctaccgcattcgtcgtgagcggcttggcgggggcggcagttggc
agtgtgggccttggcaaaattttggtggacattctgcccggttacggcgccggcgtacgt
ggcgctgtggttaccttcaagatcatgagcggcgagatgccttccacagaggacttggta
aatttgctcccggccattctatcgcccggagcattggtggtggaggtggtatgcccggcg
attttgcgccgccacgtgggcccgggcgaaggggccgtgcagtggatgaaccgtctaatt
gcgttcgcatcgcgaggcaatcacgtgtctcccacgcattacgtccctgagtccgacgcg
gcacgccgcgtgaccaccatactatcatccctcactgtgacatcccttctcagacgcctc
cacaagtggatcaatgaagattgctccaccccatgtgccgaatcttggctatgggaggta
tgggattgggtcttgcacgtgctgagtgacttcaagacgtgcttaaaagcaaagttcgtg
cccttaatgccaggcatccccctcctctcatggccaagaggctataagggagagtggcgc
ggagatggcgtgatgcatacgacatgcccctgcggagcagatctggcaggtcacatcaag
aacggctcgatgagaatcaccgggccgaaaacctgcagcaacacatggcatggaaccttc
cccatcaatgcctacaccacaggccctggtgtacccatcccggctccgaactacaagttc
gcgctttggagggtgtccgccgaggactacgtggaggttcgcagagtgggtgatttccat
tatgtcaccggggtaacacaagacaacatcaagttcccctgccaagttccggccccagag
ctcttcacggaagtggacggcatcaggatacaccgccacgcccctaagtgcaaacccttg
ctgcgggacgaagtgtcgttctcagtaggactcaattcgttcgtagtgggatcacaactc
ccatgcgagccagagccggacgtggcagtgctaacatccatgctgacagacccatcacac
ataacggcggaatcggcgcgtcggagattggctcgagggtcacgaccctcgctagctagt
tcctcggcgagtcagctttcgccccgtcttcttcaggccacgtgtaccgctccccatgac
tcccctggtactgatctcctcgaggctaacctcttgtgggggtctaccgctaccagggtt
gagacggacgagaaggtaataatactagactcttttgagtcatgtgtggctgagcaaaat
gatgacagggaagtctcggttgccgcggaaatcctgcgtccgaccaagaagttccctcca
gcactaccgatctgggcccggccggactacaatccacctcttaccgagacgtggaagcag
caggactaccaagctccgaccgtccacggttgcgctctgcctccggcaaagcagccccct
gttccctctcccaggaggaaacggacggtacagctcactgagtccgttgtttctaccgct
ttggcagagctggccgcaaagacctttggccagtcagagccgagctcagaccgtgataca
gaccttaccaccccaactgagaccacagactcgggccccatcgtcgtggatgatgcatcc
gatgacggatcttattcgtcaatgcctccactagagggggagcccggtgacccggacttg
acatcagactcttggtccactgttagcggatcggaggacgtcgtgtgctgttcgatgtca
tactcgtggactggggcgcttgtaacaccttgcgcggctgaagaatcaaagctgccaatt
agccccctgagcaattcacttttgcgccatcacaatatggtgtatgccacgaccacccgt
tctgctgtgacacggcagaagaaggtgaccttcgaccgcctgcaggtggtggacagtacc
tacaatgaagtgcttaaggagataaaggcacgagcatccagagtgaagccacgcttgctt
accacagaggaagcttgcgacctgacgcccccccactcagccagatcaaagttcggctac
gggaaaaaggatgttcggagccattcccgcaaggccattaaccacatcagctccgtgtgg
aaggacttgctggacgacaacaataccccaattccaacaacaatcatggccaaaaatgag
gtcttcgctgtgaacccagcgaagggaggtcggaagcctgctcgcctgatcgtgtatccg
gatctcggatcccgggtttgcgagaagagagcgcttcacgacgtcatcaaaaaaactgcc
ttagccgtgatgggagccgcttatggcttccaatactccccagcgcagcgggtggaattt
cttctgactgcttggaagtcgaagaacgacccaatggggttctcttatgatacccgctgc
tttgactccactgtaaccgaaaaggacatcagggtcgaggaagaggtctatcagtgttgt
gacctggagcccgaagcccgcaaagtcatcaccgccctcacagatagactctatgtgggc
ggccctatgcacaacagcaagggagacctttgtgggtatcggagatgtcgcgcaaccggc
gtctacaccaccagcttcgggaacacgctgacgtgctatctcaaagccacggccgccatc
agggcggcggcgctgagagactgcactatgttggtttgcggtgatgacttagtcgtcatc
gctgagagcgacggcgtagaggaggacaaccgagccctccgagccttcacggaggctatg
acgagatactcggctcccccaggtgacgctccgcagccagcatatgacctggaactaata
acatcatgttcatccaacgtctcagtcgcgcacgacgtgacgggtaaaaaggtatattac
ctaacccgagaccctgaaactcccttggcgcgagctgtatgggagacagtccgacacact
ccagtcaattcctggttgggaaacatcatagtctacgctcccacaatatgggtgcgcatg
atattgatgacccactttttctcaatactccagagccaggaagcccttgagaaagcactc
gacttcgatatgtacggagtcacctactctatcactccgctggatttaccggcaatcatt
caaagactccatggcttaagcgcgttcacgctgcacggatactctccacacgaactcaac
cgggtggccggagccctcagaaaacttggggtacccccgctgagagcgtggagacatcgg
gcccgagcagtccgcgctaagcttatcgcccagggaggtagagccaaaatatgtggcata
tacctctttaactgggcggtaaaaaccaaactcaaactcactccattgcctgccgctgcc
aaactcgatttatcgggttggtttacggtaggcgccggcgggggagacatttatcacagc
atgtctcatgcccgaccccgctatttactcctgtgcctactcatacttacagtaggggta
ggcatcttcctgctgcctgctcggtag

All links

Genome (1)   
   KEGG GENOME (1)   
Gene (107)   
   KEGG ORTHOLOGY (1)   
   RefGene (104)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
3D Structure (1)   
   PDB (1)   
Protein domain (15)   
   Pfam (15)   
Taxonomy (1)   
   TAX (1)   
All databases (129)   

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